diff --git a/Source/Core/Core/Src/BootManager.cpp b/Source/Core/Core/Src/BootManager.cpp
index e0fac1da87..71148efabc 100644
--- a/Source/Core/Core/Src/BootManager.cpp
+++ b/Source/Core/Core/Src/BootManager.cpp
@@ -47,7 +47,6 @@
 #include "VideoBackendBase.h"
 #include "Movie.h"
 
-
 namespace BootManager
 {
 
@@ -154,6 +153,7 @@ void Stop()
 
 	SCoreStartupParameter& StartUp = SConfig::GetInstance().m_LocalCoreStartupParameter;
 
+	StartUp.m_strUniqueID = "00000000";
 	if (config_cache.valid)
 	{
 		config_cache.valid = false;
diff --git a/Source/Core/Core/Src/CoreParameter.h b/Source/Core/Core/Src/CoreParameter.h
index e67935906b..8aa6be83e5 100644
--- a/Source/Core/Core/Src/CoreParameter.h
+++ b/Source/Core/Core/Src/CoreParameter.h
@@ -138,7 +138,7 @@ struct SCoreStartupParameter
 
 	int iTheme;
 	int iPosX, iPosY, iWidth, iHeight;
-	
+
 	enum EBootBS2
 	{
 		BOOT_DEFAULT,
diff --git a/Source/Core/Core/Src/HW/GCPad.cpp b/Source/Core/Core/Src/HW/GCPad.cpp
index 68ba3ab88a..c4798b3964 100644
--- a/Source/Core/Core/Src/HW/GCPad.cpp
+++ b/Source/Core/Core/Src/HW/GCPad.cpp
@@ -20,6 +20,7 @@
 
 #include "ControllerInterface/ControllerInterface.h"
 #include "GCPadEmu.h"
+#include "../ConfigManager.h"
 
 #include "../../InputCommon/Src/InputConfig.h"
 
@@ -55,7 +56,7 @@ void Initialize(void* const hwnd)
 	g_controller_interface.Initialize();
 
 	// load the saved controller config
-	g_plugin.LoadConfig();
+	g_plugin.LoadConfig(true);
 }
 
 void GetStatus(u8 _numPAD, SPADStatus* _pPADStatus)
diff --git a/Source/Core/Core/Src/HW/Wiimote.cpp b/Source/Core/Core/Src/HW/Wiimote.cpp
index 0928deffb1..59fe8b7fa5 100644
--- a/Source/Core/Core/Src/HW/Wiimote.cpp
+++ b/Source/Core/Core/Src/HW/Wiimote.cpp
@@ -5,6 +5,7 @@
 #include "WiimoteReal/WiimoteReal.h"
 #include "WiimoteEmu/WiimoteEmu.h"
 #include "Movie.h"
+#include "../ConfigManager.h"
 
 #include "ControllerInterface/ControllerInterface.h"
 
@@ -44,7 +45,7 @@ void Initialize(void* const hwnd)
 	g_controller_interface.SetHwnd(hwnd);
 	g_controller_interface.Initialize();
 
-	g_plugin.LoadConfig();
+	g_plugin.LoadConfig(false);
 
 	WiimoteReal::Initialize();
 	
diff --git a/Source/Core/InputCommon/Src/InputConfig.cpp b/Source/Core/InputCommon/Src/InputConfig.cpp
index b9d2a93b99..1988a9ebb7 100644
--- a/Source/Core/InputCommon/Src/InputConfig.cpp
+++ b/Source/Core/InputCommon/Src/InputConfig.cpp
@@ -16,6 +16,7 @@
 // http://code.google.com/p/dolphin-emu/
 
 #include "InputConfig.h"
+#include "../../Core/Src/ConfigManager.h"
 
 InputPlugin::~InputPlugin()
 {
@@ -26,18 +27,58 @@ InputPlugin::~InputPlugin()
 		delete *i;
 }
 
-bool InputPlugin::LoadConfig()
+bool InputPlugin::LoadConfig(bool isGC)
 {
 	IniFile inifile;
+	IniFile game_ini;
+	bool useProfile[4] = {false, false, false, false};
+	std::string num[4] = {"1", "2", "3", "4"};
+	std::string profile[4];
+	std::string path;
+
+	if (SConfig::GetInstance().m_LocalCoreStartupParameter.GetUniqueID() != "00000000")
+	{
+		std::string type;
+		if (isGC)
+		{
+			type = "Pad";
+			path = "Profiles/GCPad/";
+		}
+		else
+		{
+			type = "Wiimote";
+			path = "Profiles/Wiimote/";
+		}
+		game_ini.Load(File::GetUserPath(D_GAMECONFIG_IDX) + SConfig::GetInstance().m_LocalCoreStartupParameter.GetUniqueID() + ".ini");
+		for (int i = 0; i < 4; i++)
+		{
+			if (game_ini.Exists("Controls", (type + "Profile" + num[i]).c_str()))
+			{
+				game_ini.Get("Controls", (type + "Profile" + num[i]).c_str(), &profile[i]);
+				if (File::Exists(File::GetUserPath(D_CONFIG_IDX) + path + profile[i] + ".ini"))
+					useProfile[i] = true;
+				else
+					PanicAlertT("Selected controller profile does not exist");
+			}
+		}
+	}
+
 	if (inifile.Load(File::GetUserPath(D_CONFIG_IDX) + ini_name + ".ini"))
 	{
 		std::vector< ControllerEmu* >::const_iterator
 			i = controllers.begin(),
 			e = controllers.end();
-		for (; i!=e; ++i)
+		for (int n = 0; i!=e; ++i, ++n)
 		{
 			// load settings from ini
-			(*i)->LoadConfig(inifile.GetOrCreateSection((*i)->GetName().c_str()));
+			if (useProfile[n])
+			{
+				IniFile profile_ini;
+				profile_ini.Load(File::GetUserPath(D_CONFIG_IDX) + path + profile[n] + ".ini");
+				(*i)->LoadConfig(profile_ini.GetOrCreateSection("Profile"));
+			}
+			else
+				(*i)->LoadConfig(inifile.GetOrCreateSection((*i)->GetName().c_str()));
 			// update refs
 			(*i)->UpdateReferences(g_controller_interface);
 		}
diff --git a/Source/Core/InputCommon/Src/InputConfig.h b/Source/Core/InputCommon/Src/InputConfig.h
index 4d25334ce7..71505bb935 100644
--- a/Source/Core/InputCommon/Src/InputConfig.h
+++ b/Source/Core/InputCommon/Src/InputConfig.h
@@ -42,7 +42,7 @@ public:
 
 	~InputPlugin();
 
-	bool LoadConfig();
+	bool LoadConfig(bool isGC);
 	void SaveConfig();
 
 	std::vector< ControllerEmu* >	controllers;